Jan 2024
PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.
Li Y, Shen Z, Zhang M, Yang XY, Cleary SP, Xie J, Marathe IA, Kostelic M, Greenwald J, Rish AD, Wysocki VH, Chen C, Chen Q, Fu TM, Yu Y.
Nat Struct Mol Biol. 2024 Jan 4. doi: 10.1038/s41594-023-01172-8.
PMID: 38177683
NUA positively regulates plant immunity by coordination with ESD4 to deSUMOylate TPR1 in Arabidopsis.
Xie B, Luo M, Li Q, Shao J, Chen D, Somers DE, Tang D, Shi H.
New Phytol. 2024 Jan;241(1):363-377.
PMID: 37786257
Feb 2024
Characterization of ribosome stalling and no-go mRNA decay stimulated by the Fragile X protein, FMRP.
Scarpitti MR, Pastore B, Tang W, Kearse MG.
BioRxiv [Preprint]. 2024 Feb 3:2024.02.02.577121.
PMID: 38352534
Immune evasion, infectivity, and fusogenicity of SARS-CoV-2 BA.2.86 and FLip variants.
Qu P, Xu K, Faraone JN, Goodarzi N, Zheng YM, Carlin C, Bednash JS, Horowitz JC, Mallampalli RK, Saif LJ, Oltz EM, Jones D, Gumina RJ, Liu SL.
Cell. 2024 Feb 1;187(3):585-595.e6.
PMID: 38194968
Brief research report: impact of vaccination on antibody responses and mortality from severe COVID-19.
Adhikari B, Bednash JS, Horowitz JC, Rubinstein MP, VlasovaAN.
Front Immunol. 2024 Feb 7;15:1325243.
PMID: 38390335
Gender Difference in DNA Damage Induced by the Environmental Carcinogen Dibenzo[def,p]chrysene Individually and in Combination with Mouse Papillomavirus Infection in the Mouse Oral Cavity.
Chen KM, Sun YW, Hu J, Balogh K, Gowda K, Aliaga C, Sun D, Christensen N, Amin S, El-Bayoumy
K.ACS Omega. 2024 Feb 9;9(7):8434-8438.
PMID: 38405470
Pre-piRNA trimming safeguards piRNAs against erroneous targeting by RNA-dependent RNA polymerase.
Pastore B, Hertz HL, Tang W.
Cell Rep. 2024 Feb 27;43(2):113692.
PMID: 38244197
Corrigendum: Brief research report: impact of vaccination on antibody responses and mortality from severe COVID-19.
Adhikari B, Bednash JS, Horowitz JC, Rubinstein MP, VlasovaAN.
Front Immunol. 2024 Feb 28;15:1384209.
PMID: 38482012
Viral potential to modulate microbial methane metabolism varies by habitat.
Zhong ZP, Du J, Köstlbacher S, Pjevac P, Orlić S, Sullivan MB.
NatCommun. 2024 Feb 29;15(1):1857.
PMID: 38424049
March 2024
Progress in sarcomas: Highlights from the 2023 annual meetingof the Connective Tissue Oncology Society.
Cripe TP, Roberts RD, Chandler DS, Setty BA, Chen S, Shenoy A, Venkataramany AS, Ringwalt EM, Scharschmidt T, Utset-Ward T, Konieczkowski DJ, Grignol VP, Beane JD, Ruff SM, Pollock RE.
MolTher Oncol. 2024 Mar 2;32(1):200779.
PMID: 38596308
Protein complex heterogeneity and topology revealed by electron capture charge reduction and surface induced dissociation.
Shaw J, Harvey S, Du C, Xu Z, Olmedillas E, Saphire EO, Wysocki VH.
bioRxiv [Preprint]. 2024 Mar 9:2024.03.07.583498.
PMID: 38496594
Distinct Patterns of SARS-CoV-2 BA.2.87.1 and JN.1 Variants in Immune Evasion, Antigenicity and Cell-Cell Fusion.
Li P, Liu Y, Faraone J, Hsu CC, Chamblee M, Zheng YM, Carlin C, Bednash JS, Horowitz JC, Mallampalli RK, Saif LJ, Oltz EM, Jones D, Li J, Gumina RJ, Liu SL.
bioRxiv [Preprint]. 2024 Mar 11:2024.03.11.583978.
PMID: 38559216
Remote Delivery of Mindful Movement Within Healthcare Systems: Lessons Learned From the Veterans Health Administration.
Whitehead AM, Mullur R, Sullivan MB, Nicosia FM.
Glob Adv Integr Med Health. 2024 Mar 17;13:27536130241235908.
PMID: 38501126
Macrophages derived from human induced pluripotent stem cells (iPSCs) serve as a high-fidelity cellular model for investigating HIV-1, dengue, and influenza viruses.
Yang Q, Barbachano-Guerrero A, Fairchild LM, Rowland TJ, Dowell RD, Allen MA, Warren CJ, Sawyer SL.
JVirol. 2024 Mar 19;98(3):e0156323.
PMID: 38323811
The ClC-1 chloride channel inhibitor NMD670 improves skeletal muscle function in rat models and patients with myasthenia gravis.
Skov M, Ruijs TQ, Grønnebæk TS, Skals M, Riisager A, Winther JB, Dybdahl KLT, Findsen A, Morgen JJ, Huus N, Broch-Lips M, Nielsen OB, de Cuba CMKE, Heuberger JAAC, de Kam ML, Tannemaat M, Verschuuren JJGM, Knutsen LJS, Kelly NM, Jensen KG, Arnold WD, Burghes AH, Olesen C, Bold J, Petersen TK, Quiroz JA, Hutchison J, Chin ER, Groeneveld GJ, Pedersen TH.
SciTransl Med. 2024 Mar 20;16(739):eadk9109.
PMID: 38507469 Clinical Trial.
Adaptation of CD4 in gorillas and chimpanzees conveyed resistance to simian immunodeficiency viruses.
Warren CJ, Barbachano-Guerrero A, Bauer VL, Stabell AC, Dirasantha O, Yang Q, Sawyer SL.
bioRxiv [Preprint]. 2024 Mar 25:2023.11.13.566830.
PMID: 38014262
Metamorphic proteins and how to find them.
Porter LL, Artsimovitch I, Ramírez-Sarmiento CA.
CurrOpin Struct Biol. 2024 Mar 26;86:102807.
PMID: 38537533
Cell-cell communication and initial population composition shape the structure of potato spindle tuber viroid quasispecies.
Wu J, Bisaro DM.
Plant Cell. 2024 Mar 29;36(4):1036-1055.
PMID: 38252648
Environment-specific virocell metabolic reprogramming.
Howard-Varona C, Lindback MM, Fudyma JD, Krongauz A, Solonenko NE, Zayed AA, Andreopoulos WB, Olson HM, Kim YM, Kyle JE, Del Rio TG, Adkins JN, Tfaily MM, Paul S, Sullivan MB, Duhaime MB.
ISME J. 2024 Mar 29:wrae055.
PMID: 38552150
PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.
Li Y, Shen Z, Zhang M, Yang XY, Cleary SP, Xie J, Marathe IA, Kostelic M, Greenwald J, Rish AD, Wysocki VH, Chen C, Chen Q, Fu TM, Yu Y.
Nat Struct Mol Biol. 2024 Mar;31(3):413-423.
PMID: 38177683
AprIl 2024
Pharmacological agents targeting drug-tolerant persister cells in cancer.
Chen YC, Gowda K, Amin S, Schell TD, Sharma AK, Robertson GP.
Pharmacol Res. 2024 May;203:107163.
PMID: 38569982
Contribution of an alternative 16S rRNA helix to biogenesis of the 30S subunit of the ribosome.
Warner BR, Fredrick K.
RNA. 2024 Apr 3:rna.079960.124. doi:10.1261/rna.079960.124. Online ahead of print.
PMID: 38570183
RNA three-dimensional structure drives the sequence organization of potato spindle tuber viroid quasispecies.
Wu J, Zhang Y, Nie Y, Yan F, Zirbel CL, Bisaro DM.
PLoSPathog. 2024 Apr 4;20(4):e1012142. doi:10.1371/journal.ppat.1012142. eCollection 2024 Apr.
PMID: 38574111
Protein analysis using capillary electrophoresis coupled to mass spectrometry through vibrating sharp-edge spray ionization.
Witzel MT, Veltri LM, Kostelic M, Elshamy YS, Lucas JA, Lai S, Du C, Wysocki VH, Holland LA.
Electrophoresis. 2024 Apr 5. doi:10.1002/elps.202300298. Online ahead of print.
PMID: 38577828
Concerted transformation of a hyper-paused transcription complex and its reinforcing protein.
Zuber PK, Said N, Hilal T, Wang B, Loll B, González-Higueras J, Ramírez-Sarmiento CA, Belogurov GA, Artsimovitch I, Wahl MC, Knauer SH.
NatCommun. 2024 Apr 8;15(1):3040. doi:10.1038/s41467-024-47368-4.
PMID: 38589445
Distinct patterns of SARS-CoV-2 BA.2.87.1 and JN.1 variants in immune evasion, antigenicity, and cell-cell fusion.
Li P, Liu Y, Faraone JN, Hsu CC, Chamblee M, Zheng Y-M, Carlin C, Bednash JS, Horowitz JC, Mallampalli RK, Saif LJ, Oltz EM, Jones D, Li J, Gumina RJ, Liu S-L.
mBio. 2024 May 8;15(5):e0075124. doi:10.1128/mbio.00751-24. Epub 2024 Apr 9.
PMID: 3859189
The treatment of oily wastewater by thermo-responsive calcium alginate capsules immobilized Pseudomonas aeruginosa.
Lin YL, Zhao MX, Yu YL, Liu SL, Li M, Jiang AL, Deng M.
Water Environ Res. 2024 Apr;9 6(4):e11022. doi:10.1002/wer.11022.
PMID: 38655583
Single-molecule epitranscriptomic analysis of full-length HIV-1 RNAs reveals functional roles of site-specific m6As.
Baek A, Lee GE, Golconda S, Rayhan A, Manganaris AA, Chen S, Tirumuru N, Yu H, Kim S, Kimmel C, Zablocki O, Sullivan MB, Addepalli B, Wu L, Kim S.
NatMicrobiol. 2024 May;9(5):1340-1355. doi:10.1038/s41564-024-01638-5. Epub 2024 Apr 11.
PMID: 38605174
Reciprocating RNA Polymerase batters through roadblocks.
Qian J, Cartee A, Xu W, Yan Y, Wang B, Artsimovitch I, Dunlap D, Finzi L.
NatCommun. 2024 Apr 12;15(1):3193. doi:10.1038/s41467-024-47531-x.
PMID: 38609371
Sm-like protein Rof inhibits transcription termination factor ρ by binding site obstruction and conformational insulation.
Said N, Finazzo M, Hilal T, Wang B, Selinger TL, Gjorgjevikj D, Artsimovitch I, Wahl MC.
NatCommun. 2024 Apr 15;15(1):3186. doi:10.1038/s41467-024-47439-6.
PMID: 38622114
To initiate or not to initiate: A critical assessment of eIF2A, eIF2D, and MCT-1·DENR to deliver initiator tRNA to ribosomes.
Grove DJ, Russell PJ, Kearse MG.
WileyInterdiscip Rev RNA. 2024 Mar-Apr;15(2):e1833. doi:10.1002/wrna.1833.
PMID: 38433101
Molecular basis of Gabija anti-phage supramolecular assemblies.
Yang XY, Shen Z, Xie J, Greenwald J, Marathe I, Lin Q, Xie WJ, Wysocki VH, Fu TM.
Nat Struct Mol Biol. 2024 Apr 16. doi:10.1038/s41594-024-01283-w. Online ahead of print.
PMID: 38627580
Network-based approach elucidates critical genes in BRCA subtypes and chemotherapy response in triple negative breast cancer.
Agrawal P, Jain N, Gopalan V, Timon A, Singh A, Rajagopal PS, Hannenhalli S.
iScience. 2024 Apr 16;27(5):109752. doi:10.1016/j.isci.2024.109752. eCollection 2024 May 17.
PMID: 38699227
CD3ε of a pan T cell marker involved in mouse Aspergillus fumigatus keratitis.
Shi WH, Wang LM, Yan HJ, Liu SL, Yang X, Yang XJ, Che CY.
Int J Ophthalmol. 2024 Apr 18;17(4):616-624. doi:10.18240/ijo.2024.04.03. eCollection 2024.
PMID: 38638265
Structural Basis for the Interaction of Redβ Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein.
Zakharova K, Liu M, Greenwald JR, Caldwell BC, Qi Z, Wysocki VH, Bell CE.
J Mol Biol. 2024 Apr 24;436(11):168590. doi:10.1016/j.jmb.2024.168590. Online ahead of print.
PMID: 38663547
Testing sea urchin and green sea turtle consumption of the allelopathic macroalga Galaxaura divaricata.
Nieder C, Heatwole SJ, Liao CP, Lee CL, Chen CA, Liu SL.
EcolEvol. 2024 Apr 25;14(4):e11324. doi:10.1002/ece3.11324. eCollection 2024 Apr.
PMID: 38681181
High-entropy engineering of the crystal and electronic structures in a Dirac material.
Laha A, Yoshida S, Marques Dos Santos Vieira F, Yi H, Lee SH, Ayyagari SVG, Guan Y, Min L, Gonzalez Jimenez J, Miao L, Graf D, Sarker S, Xie W, Alem N, Gopalan V, Chang CZ, Dabo I, Mao Z.
NatCommun. 2024 Apr 26;15(1):3532. doi:10.1038/s41467-024-47781-9.
PMID: 38670964
Influence of muscle activation on lumbar injury under a specific +Gz load.
Lei K, Zhao CZ, Li F, Liu SL, Yang P.
Chin J Traumatol. 2024 Apr 28:S1008-1275(24)00057-9. doi:10.1016/j.cjtee.2024.04.006. Online ahead of print.
PMID: 38744544
Rapid discrimination of four Salmonella enterica serovars: A performance comparison between benchtop and handheld Raman spectrometers. Z
Yuan Q, Gu B, Liu W, Wen XR, Wang JL, Tang JW, Usman M, Liu SL, Tang YR, Wang L.
J Cell Mol Med. 2024 Apr;28(8):e18292. doi:10.1111/jcmm.18292.
PMID: 38652116
Native proteomics by capillary zone electrophoresis-mass spectrometry.
Wang Q, Wang Q, Qi Z, Moeller W, Wysocki VH, Sun L.
bioRxiv [Preprint]. 2024 Apr 28:2024.04.24.590970. doi:10.1101/2024.04.24.590970.
PMID: 38712154
Lactiplantibacillus plantarum RS20D Alleviates Male Reproductive Toxicity Induced by Pubertal Exposure to Di-n-butyl Phthalate and Mono-n-butyl Phthalate.
Zhu YT, Wang XJ, Liu SL, Lai JH, Li JL, Li Q, Hu KD, Liu AP, Yang Y, He L, Chen SJ, Ao XL, Zou LK.
ProbioticsAntimicrob Proteins. 2024 Apr 29. doi:10.1007/s12602-024-10276-6. Online ahead of print.
PMID: 38683273
Human T-cell leukemia virus type 1 uses a specific tRNAPro isodecoder to prime reverse transcription.
Syu YC, Hatterschide J, Budding CR, Tang Y, Musier-Forsyth K.
RNA. 2024 Apr 29:rna.080006.124. doi:10.1261/rna.080006.124. Online ahead of print.
PMID: 38684316
Isolation of Diverse Simian Arteriviruses Causing Hemorrhagic Disease.
Shaw TM, Dettle ST, Mejia A, Hayes JM, Simmons HA, Basu P, Kuhn JH, Ramuta MD, Warren CJ, Jahrling PB, O'Connor DH, Huang L, Zaeem M, Seo J, Slukvin II, Brown ME, Bailey AL.
Emerg Infect Dis. 2024 Apr;30(4):721-731. doi:10.3201/eid3004.231457.
PMID: 38526136
Repeatability and reproducibility of hunter-harvest sampling for avian influenza virus surveillance in Great Britain.
Shemmings-Payne W, De Silva D, Warren CJ, Thomas S, Slomka MJ, Reid SM, James J, Banyard AC, Brown IH, Ward AI.
Res Vet Sci. 2024 Apr 30;173:105279. doi:10.1016/j.rvsc.2024.105279. Online ahead of print.
PMID: 38704977
May 2024
Enhanced Long-Term Corrosion Resistance of 316L Stainless Steel by Multilayer Amorphous Carbon Coatings.
Li S, Li H, Guo P, Li X, Yang W, Ma G, Nishimura K, Ke P, Wang A.
Materials (Basel). 2024 May 1;17(9):2129. doi:10.3390/ma17092129.
PMID: 38730935
Prevalence of metabolic syndrome among patients with hepatocellular carcinoma of different etiologies: a retrospective study.
Yang DL, Liu SP, Wang HL, Li JR, Su JY, Li MJ, Teng YX, Deng ZJ, Li ZH, Huang JL, Guo PP, Ma L, Li ZZ, Zhong JH.
Infect Agent Cancer. 2024 May 1;19(1):21. doi:10.1186/s13027-024-00575-6.
PMID: 3869355
Structural basis of nearest-neighbor cooperativity in the ring-shaped gene regulatory protein TRAP from protein engineering and cryo-EM.
Li W, Yang H, Stachowski K, Norris AS, Lichtenthal K, Kelly S, Gollnick P, Wysocki VH, Foster MP.
bioRxiv [Preprint]. 2024 May 5:2024.05.02.592192. doi:10.1101/2024.05.02.592192.
PMID: 38746386
Regulation of Protein Conformation Enables Cell-Selective Targeting of Virus-Mimicking Nanoparticles for siRNA Therapy of Glioblastoma.
Zhu H, Wang YF, Wang ZG, Pang DW, Liu SL.
Adv Mater. 2024 May 6:e2401640. doi:10.1002/adma.202401640. Online ahead of print.
PMID: 38710154
Quantum fluctuations lead to glassy electron dynamics in the good metal regime of electron doped KTaO3.
Ojha SK, Hazra S, Bera S, Gogoi SK, Mandal P, Maity J, Gloskovskii A, Schlueter C, Karmakar S, Jain M, Banerjee S, Gopalan V, Middey S.
NatCommun. 2024 May 7;15(1):3830. doi:10.1038/s41467-024-47956-4.
PMID: 38714672
Rediscovery of Lycodongammiei (Blanford, 1878) (Serpentes, Colubridae) in Xizang, China, with comments on its systematic position.
Shu F, Lyu B, Guo K, Zhang T, Mi X, Li L, Wu Y, Guo P.
Zookeys. 2024 May 7;1200:65-74. doi:10.3897/zookeys.1200.117260. eCollection 2024.
PMID: 38751966
Electrochemiluminescence-Based Single-Particle Tracking of the Biomolecules Moving along Intercellular Membrane Nanotubes between Live Cells.
Wang ZG, Hu Y, Liu HY, Wen HY, Qi BP, Liu SL.
Anal Chem. 2024 May 7;96(18):7231-7239. doi:10.1021/acs.analchem.4c00805. Epub 2024 Apr 24.
PMID: 38656982
In Situ Quantitative Imaging of Plasma Membrane Stiffness in Live Cells Using a Genetically Encoded FRET Sensor.
Hu Y, Wen HY, Liu MY, Wang JM, Dong RL, Liu SL, Wang ZG.
Anal Chem. 2024 May 8. doi:10.1021/acs.analchem.4c00433. Online ahead of print.
PMID: 38717985
Upregulation of HAS2 promotes glioma cell proliferation and chemoresistance via c-myc.
Wang J, Ruan S, Yu T, Meng X, Ran J, Cen C, Kong C, Bao X, Li Z, Wang Y, Ren M, Guo P, Teng Y, Zhang D.
CellSignal. 2024 May 9:111218. doi:10.1016/j.cellsig.2024.111218. Online ahead of print.
PMID: 38734194
A tribute to Sidney Altman, one of the architects of modern RNA biology.
Gopalan V, Kirsebom LA.
J Biol Chem. 2024 May 10:107364. doi:10.1016/j.jbc.2024.107364. Online ahead of print.
PMID: 38735479
Efficient and durable oxygen reduction in alkaline media by doping heteroatomic boron into FeSA-NC catalyst.
Zhang W, Zhang S, Guo P, Chen H, Zhou Y, Yu F.
J Colloid Interface Sci. 2024 May 12;669:896-901. doi:10.1016/j.jcis.2024.05.076. Online ahead of print.
PMID: 38749228
Asymmetric Wettability Janus Mesh via Electrostatic Printing for Selective Oil-Water and Emulsion Separation.
Chen F, Liu X, Huang S.
Langmuir. 2024 May 12. doi:10.1021/acs.langmuir.4c00623. Online ahead of print.
PMID: 38736194
Linearly Polarized Broadband Emission and Multi-Wavelength Lasing in Solution-Processed Quantum Dots.
Wang J, Zhou Y, Huang D, Liao C, Zhou H, Guo P, Li Z, Zhou G, Yu X, Hu J.
Adv Mater. 2024 May 13:e2403017. doi:10.1002/adma.202403017. Online ahead of print.
PMID: 38739121
Scalable Precise Nanofilm Coating and Gradient Al Doping Enable Stable Battery Cycling of LiCoO2 at 4.7 V.
Yao J, Li Y, Xiong T, Fan Y, Zhao L, Cheng X, Tian Y, Li L, Li Y, Zhang W, Yu P, Guo P, Yang Z, Peng J, Xue L, Wang J, Li Z, Xie M, Liu H, Dou S.
Angew Chem Int Ed Engl. 2024 May 13:e202407898. doi:10.1002/anie.202407898. Online ahead of print.
PMID: 38739536
Impact of Telemedicine on Blood Glucose Control and Ophthalmic Screenings for Patients with Diabetes in Remote Areas During the COVID-19 Pandemic: A Real-World Study in Northern Taiwan.
Chang HC, Wang LU, Chiou HY, Chen RC, Chen HF, Yao CW, Liu SL, Chen KC, Liao YT, Lin TC, Chuang WP, Wang JK.
Telemed J E Health. 2024 May 13. doi:10.1089/tmj.2024.0147. Online ahead of print.
PMID: 38739447
Elevated serum levels of soluble B-cell maturation antigen as a prognostic biomarker for multiple myeloma.
Guo P, Wang Y, He H, Chen D, Liu J, Qiang W, Lu J, Liang Y, Du J.
Clin Exp Immunol. 2024 May 14:uxae043. doi:10.1093/cei/uxae043. Online ahead of print.
PMID: 38743453
Long-read powered viral metagenomics in the oligotrophic Sargasso Sea.
Warwick-Dugdale J, Tian F, Michelsen ML, Cronin DR, Moore K, Farbos A, Chittick L, Bell A, Zayed AA, Buchholz HH, Bolanos LM, Parsons RJ, Allen MJ, Sullivan MB, Temperton B.
NatCommun. 2024 May 14;15(1):4089. doi:10.1038/s41467-024-48300-6.
PMID: 38744831
Multi-omics analyses provide insights into the genomic basis of differentiation among four sweet osmanthus groups.
Li Y, Zhao H, Xia HX, Huang J, Ma N, Guo P, Liu YP, Liu HL, Wang YH, Lin N, Shang FD.
Plant Physiol. 2024 May 16:kiae280. doi:10.1093/plphys/kiae280. Online ahead of print.
PMID: 38753307
Parkinson's disease with anxiety: clinical characteristics and their correlation with oxidative stress, inflammation, and pathological proteins.
Lian T, Zhang W, Li D, Guo P, He M, Zhang Y, Li J, Guan H, Zhang W, Luo D, Zhang W, Wang X, Zhang W.
BMC Geriatr. 2024 May 16;24(1):433. doi:10.1186/s12877-024-04854-0.
PMID: 38755545
Endothelial EGLN3-PKM2 signaling induces the formation of acute astrocytic barrier to alleviate immune cell infiltration after subarachnoid hemorrhage.
Duan M, Ru X, Zhou J, Li Y, Guo P, Kang W, Li W, Chen Z, Feng H, Chen Y.
Fluids Barriers CNS. 2024 May 16;21(1):42. doi:10.1186/s12987-024-00550-8.
PMID: 38755642