Center for RNA Biology Publications

Publications by Zucai Suo since 2000

• Cuiling Xu, Brian A Maxwell, Jessica A Brown, Likui Zhang, and Zucai Suo
  "Global conformational dynamics of a Y-family DNA polymerase during catalysis."
  PLoS Biol. 7, e1000225 (2009).

• Likui Zhang, Jessica A Brown, Sean A Newmister, and Zucai Suo
  "Polymerization fidelity of a replicative DNA polymerase from the hyperthermophilic archaeon Sulfolobus solfataricus P2."
  Biochemistry 48, 7492-501 (2009).

• Jessica A Brown and Zucai Suo
  "Elucidating the kinetic mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase B1."
  Biochemistry 48, 7502-11 (2009).

• Jason D Fowler, Jessica A Brown, Mamuka Kvaratskhelia, and Zucai Suo
  "Probing conformational changes of human DNA polymerase lambda using mass spectrometry-based protein footprinting."
  J. Mol. Biol. 390, 368-79 (2009).

• Shanen M Sherrer, Jessica A Brown, Lindsey R Pack, Vijay P Jasti, Jason D Fowler, Ashis K Basu, and Zucai Suo
  "Mechanistic studies of the bypass of a bulky single-base lesion catalyzed by a Y-family DNA polymerase."
  J. Biol. Chem. 284, 6379-88 (2009).

• Lindsey DeCarlo, A S Prakasha Gowda, Zucai Suo, and Thomas E Spratt
  "Formation of purine-purine mispairs by Sulfolobus solfataricus DNA polymerase IV."
  Biochemistry 47, 8157-64 (2008).

• Jessica A Brown, Sean A Newmister, Kevin A Fiala, and Zucai Suo
  "Mechanism of double-base lesion bypass catalyzed by a Y-family DNA polymerase."
  Nucleic Acids Res. 36, 3867-78 (2008).

• Jimson H Wong, Kevin A Fiala, Zucai Suo, and Hong Ling
  "Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4."
  J. Mol. Biol. 379, 317-30 (2008).

• Jason D Fowler, Jessica A Brown, Kenneth A Johnson, and Zucai Suo
  "Kinetic investigation of the inhibitory effect of gemcitabine on DNA polymerization catalyzed by human mitochondrial DNA polymerase."
  J. Biol. Chem. 283, 15339-48 (2008).

• Kevin A Fiala, Shanen M Sherrer, Jessica A Brown, and Zucai Suo
  "Mechanistic consequences of temperature on DNA polymerization catalyzed by a Y-family DNA polymerase."
  Nucleic Acids Res. 36, 1990-2001 (2008).

• Jessica A Brown, Wade W Duym, Jason D Fowler, and Zucai Suo
  "Single-turnover kinetic analysis of the mutagenic potential of 8-oxo-7,8-dihydro-2-deoxyguanosine during gap-filling synthesis catalyzed by human DNA polymerases lambda and beta."
  J. Mol. Biol. 367, 1258-69 (2007).

• Kevin A Fiala, Cameron D Hypes, and Zucai Suo
  "Mechanism of abasic lesion bypass catalyzed by a Y-family DNA polymerase."
  J. Biol. Chem. 282, 8188-98 (2007).

• Kevin A Fiala and Zucai Suo
  "Sloppy bypass of an abasic lesion catalyzed by a Y-family DNA polymerase."
  J. Biol. Chem. 282, 8199-206 (2007).

• Zucai Suo and Mohd Amir F Abdullah
  "Unique composite active site of the hepatitis C virus NS2-3 protease: a new opportunity for antiviral drug design."
  ChemMedChem 2, 283-4 (2007).

• Kevin A Fiala, Jessica A Brown, Hong Ling, Ajay K Kshetry, Jun Zhang, John-Stephen Taylor, Wei Yang, and Zucai Suo
  "Mechanism of template-independent nucleotide incorporation catalyzed by a template-dependent DNA polymerase."
  J. Mol. Biol. 365, 590-602 (2007).

• Wade W Duym, Kevin A Fiala, Nikunj Bhatt, and Zucai Suo
  "Kinetic effect of a downstream strand and its 5-terminal moieties on single nucleotide gap-filling synthesis catalyzed by human DNA polymerase lambda."
  J. Biol. Chem. 281, 35649-55 (2006).

• Kevin A Fiala, Wade W Duym, Jun Zhang, and Zucai Suo
  "Up-regulation of the fidelity of human DNA polymerase lambda by its non-enzymatic proline-rich domain."
  J. Biol. Chem. 281, 19038-44 (2006).

• Jason D Fowler and Zucai Suo
  "Biochemical, structural, and physiological characterization of terminal deoxynucleotidyl transferase."
  Chem. Rev. 106, 2092-110 (2006).

• Zucai Suo
  "Thioesterase portability and peptidyl carrier protein swapping in yersiniabactin synthetase from Yersinia pestis."
  Biochemistry 44, 4926-38 (2005).

• Michelle P Roettger, Kevin A Fiala, Susmitha Sompalli, Yuxia Dong, and Zucai Suo
  "Pre-steady-state kinetic studies of the fidelity of human DNA polymerase mu."
  Biochemistry 43, 13827-38 (2004).

• Kevin A Fiala, Wissam Abdel-Gawad, and Zucai Suo
  "Pre-steady-state kinetic studies of the fidelity and mechanism of polymerization catalyzed by truncated human DNA polymerase lambda."
  Biochemistry 43, 6751-62 (2004).

• Kevin A Fiala and Zucai Suo
  "Pre-steady-state kinetic studies of the fidelity of Sulfolobus solfataricus P2 DNA polymerase IV."
  Biochemistry 43, 2106-15 (2004).

• Kevin A Fiala and Zucai Suo
  "Mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase IV."
  Biochemistry 43, 2116-25 (2004).

• A A Johnson, A S Ray, J Hanes, Z Suo, J M Colacino, K S Anderson, and K A Johnson
  "Toxicity of antiviral nucleoside analogs and the human mitochondrial DNA polymerase."
  J. Biol. Chem. 276, 40847-57 (2001).