Center for RNA Biology Publications

Publications by Amanda Bird since 2000

• Amanda J Bird
  "Metallosensors, the ups and downs of gene regulation."
  Adv. Microb. Physiol. 53, 231-67 (2008).

• Chang-Yi Wu, Amanda J Bird, Lisa M Chung, Michael A Newton, Dennis R Winge, and David J Eide
  "Differential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae."
  BMC Genomics 9, 370 (2008).

• Oleh Khalimonchuk, Amanda Bird, and Dennis R Winge
  "Evidence for a pro-oxidant intermediate in the assembly of cytochrome oxidase."
  J. Biol. Chem. 282, 17442-9 (2007).

• Chang-Yi Wu, Amanda J Bird, Dennis R Winge, and David J Eide
  "Regulation of the yeast TSA1 peroxiredoxin by ZAP1 is an adaptive response to the oxidative stress of zinc deficiency."
  J. Biol. Chem. 282, 2184-95 (2007).

• Amanda J Bird, Mat Gordon, David J Eide, and Dennis R Winge
  "Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts."
  EMBO J. 25, 5726-34 (2006).

• Amanda J Bird, Sabina Swierczek, Wei Qiao, David J Eide, and Dennis R Winge
  "Zinc metalloregulation of the zinc finger pair domain."
  J. Biol. Chem. 281, 25326-35 (2006).

• Wei Qiao, Michelle Mooney, Amanda J Bird, Dennis R Winge, and David J Eide
  "Zinc binding to a regulatory zinc-sensing domain monitored in vivo by using FRET."
  Proc. Natl. Acad. Sci. U.S.A. 103, 8674-9 (2006).

• Greg Keller, Amanda Bird, and Dennis R Winge
  "Independent metalloregulation of Ace1 and Mac1 in Saccharomyces cerevisiae."
  Eukaryotic Cell 4, 1863-71 (2005).

• Andrew Herbig, Amanda J Bird, Sabina Swierczek, Keith McCall, Michelle Mooney, Chang-Yi Wu, Dennis R Winge, and David J Eide
  "Zap1 activation domain 1 and its role in controlling gene expression in response to cellular zinc status."
  Mol. Microbiol. 57, 834-46 (2005).

• Amanda J Bird, Elizabeth Blankman, David J Stillman, David J Eide, and Dennis R Winge
  "The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2."
  EMBO J. 23, 1123-32 (2004).

• Julian C Rutherford and Amanda J Bird
  "Metal-responsive transcription factors that regulate iron, zinc, and copper homeostasis in eukaryotic cells."
  Eukaryotic Cell 3, 1-13 (2004).

• Amanda J Bird, Keith McCall, Michelle Kramer, Elizabeth Blankman, Dennis R Winge, and David J Eide
  "Zinc fingers can act as Zn2 sensors to regulate transcriptional activation domain function."
  EMBO J. 22, 5137-46 (2003).

• M V Evans-Galea, E Blankman, D G Myszka, A J Bird, D J Eide, and D R Winge
  "Two of the five zinc fingers in the Zap1 transcription factor DNA binding domain dominate site-specific DNA binding."
  Biochemistry 42, 1053-61 (2003).

• A J Bird, H Zhao, H Luo, L T Jensen, C Srinivasan, M Evans-Galea, D R Winge, and D J Eide
  "A dual role for zinc fingers in both DNA binding and zinc sensing by the Zap1 transcriptional activator."
  EMBO J. 19, 3704-13 (2000).