Center for RNA Biology Publications

Publications by Biao Ding since 2000

• Nora Schwind, Michèle Zwiebel, Asuka Itaya, Biao Ding, Ming-Bo Wang, Gabi Krczal, and Michael Wassenegger
  "RNAi-mediated resistance to Potato spindle tuber viroid in transgenic tomato expressing a viroid hairpin RNA construct."
  Mol. Plant Pathol. 10, 459-69 (2009).

• Biao Ding and Ying Wang
  "Viroids: uniquely simple and tractable models to elucidate regulation of cell-to-cell trafficking of RNA."
  DNA Cell Biol. 28, 51-6 (2009).

• Shuiming Qian, Xuehua Zhong, Lianbo Yu, Biao Ding, Peter de Haan, and Kathleen Boris-Lawrie
  "HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1."
  Proc. Natl. Acad. Sci. U.S.A. 106, 605-10 (2009).

• Biao Ding
  "The biology of viroid-host interactions."
  Annual review of phytopathology 47, 105-31 (2009).

• Asuka Itaya, Ralf Bundschuh, Anthony J Archual, Je-Gun Joung, Zhangjun Fei, Xinbin Dai, Patrick X Zhao, Yuhong Tang, Richard S Nelson, and Biao Ding
  "Small RNAs in tomato fruit and leaf development."
  Biochim. Biophys. Acta 1779, 99-107 (2008).

• Xuehua Zhong and Biao Ding
  "Distinct RNA motifs mediate systemic RNA trafficking."
  Plant Signal Behav 3, 58-9 (2008).

• Xuehua Zhong, Anthony J Archual, Amy A Amin, and Biao Ding
  "A genomic map of viroid RNA motifs critical for replication and systemic trafficking."
  Plant Cell 20, 35-47 (2008).

• Xuehua Zhong, Xiaorong Tao, Jesse Stombaugh, Neocles Leontis, and Biao Ding
  "Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking."
  EMBO J. 26, 3836-46 (2007).

• Asuka Itaya, Xuehua Zhong, Ralf Bundschuh, Yijun Qi, Ying Wang, Ryuta Takeda, Ann R Harris, Carlos Molina, Richard S Nelson, and Biao Ding
  "A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation."
  J. Virol. 81, 2980-94 (2007).

• Ying Wang, Xuehua Zhong, Asuka Itaya, and Biao Ding
  "Evidence for the existence of the loop E motif of Potato spindle tuber viroid in vivo."
  J. Virol. 81, 2074-7 (2007).

• Biao Ding and Asuka Itaya
  "Viroid: a useful model for studying the basic principles of infection and RNA biology."
  Mol. Plant Microbe Interact. 20, 7-20 (2007).

• Xuehua Zhong, Neocles Leontis, Shuiming Qian, Asuka Itaya, Yijun Qi, Kathleen Boris-Lawrie, and Biao Ding
  "Tertiary structural and functional analyses of a viroid RNA motif by isostericity matrix and mutagenesis reveal its essential role in replication."
  J. Virol. 80, 8566-81 (2006).

• Biao Ding, Asuka Itaya, and Xuehua Zhong
  "Viroid trafficking: a small RNA makes a big move."
  Curr. Opin. Plant Biol. 8, 606-12 (2005).

• Xuesong Cao, Peng Zhou, Xiaoming Zhang, Shifeng Zhu, Xuehua Zhong, Qi Xiao, Biao Ding, and Yi Li
  "Identification of an RNA silencing suppressor from a plant double-stranded RNA virus."
  J. Virol. 79, 13018-27 (2005).

• Xuehua Zhong, Asuka Itaya, and Biao Ding
  "Transfecting protoplasts by electroporation to study viroid replication."
  Current protocols in microbiology 0, Unit 16D.4 (2005).

• Yijun Qi, Thierry Pélissier, Asuka Itaya, Elizabeth Hunt, Michael Wassenegger, and Biao Ding
  "Direct role of a viroid RNA motif in mediating directional RNA trafficking across a specific cellular boundary."
  Plant Cell 16, 1741-52 (2004).

• Yijun Qi, Xuehua Zhong, Asuka Itaya, and Biao Ding
  "Dissecting RNA silencing in protoplasts uncovers novel effects of viral suppressors on the silencing pathway at the cellular level."
  Nucleic Acids Res. 32, e179 (2004).

• Biao Ding, Asuka Itaya, and Yijun Qi
  "Symplasmic protein and RNA traffic regulatory points and regulatory factors."
  Curr. Opin. Plant Biol. 6, 596-602 (2003).

• Yijun Qi and Biao Ding
  "Differential subnuclear localization of RNA strands of opposite polarity derived from an autonomously replicating viroid."
  Plant Cell 15, 2566-77 (2003).

• Yijun Qi and Biao Ding
  "Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA."
  Plant Cell 15, 1360-74 (2003).

• Yijun Qi and Biao Ding
  "Replication of Potato spindle tuber viroid in cultured cells of tobacco and Nicotiana benthamiana the role of specific nucleotides in determining replication levels for host adaptation."
  Virology 302, 445-56 (2002).

• Yoshie Matsuda, Genqing Liang, Yali Zhu, Fengshan Ma, Richard S Nelson, and Biao Ding
  "The Commelina yellow mottle virus promoter drives companion-cell-specific gene expression in multiple organs of transgenic tobacco."
  Protoplasma 220, 51-8 (2002).

• Asuka Itaya, Yoshie Matsuda, Robert A Gonzales, Richard S Nelson, and Biao Ding
  "Potato spindle tuber viroid strains of different pathogenicity induces and suppresses expression of common and unique genes in infected tomato."
  Mol. Plant Microbe Interact. 15, 990-9 (2002).

• Asuka Itaya, Fengshan Ma, Yijun Qi, Yoshie Matsuda, Yali Zhu, Genqing Liang, and Biao Ding
  "Plasmodesma-mediated selective protein traffic between "
  Plant Cell 14, 2071-83 (2002).

• Yali Zhu, Yijun Qi, Yan Xun, Robert Owens, and Biao Ding
  "Movement of potato spindle tuber viroid reveals regulatory points of phloem-mediated RNA traffic."
  Plant Physiol. 130, 138-46 (2002).

• A Itaya, A Folimonov, Y Matsuda, R S Nelson, and B Ding
  "Potato spindle tuber viroid as inducer of RNA silencing in infected tomato."
  Mol. Plant Microbe Interact. 14, 1332-4 (2001).

• R A Owens, M Blackburn, and B Ding
  "Possible involvement of the phloem lectin in long-distance viroid movement."
  Mol. Plant Microbe Interact. 14, 905-9 (2001).

• Y Zhu, L Green, Y M Woo, R Owens, and B Ding
  "Cellular basis of potato spindle tuber viroid systemic movement."
  Virology 279, 69-77 (2001).