Center for RNA Biology Publications

Publications by Daniel Schoenberg since 2000

• Morris Nechama, Yong Peng, Osnat Bell, Paola Briata, Roberto Gherzi, Daniel Schoenberg, and Tally Naveh-Many
  "KSRP-PMR1-exosome association determines parathyroid hormone mRNA levels and stability in transfected cells."
  BMC Cell Biol. 10, 70 (2009).

• Daniel R Schoenberg and Lynne E Maquat
  "Re-capping the message."
  Trends Biochem. Sci. 34, 435-42 (2009).

• Yuichi Otsuka, Nancy L Kedersha, and Daniel R Schoenberg
  "Identification of a cytoplasmic complex that adds a cap onto 5-monophosphate RNA."
  Mol. Cell. Biol. 29, 2155-67 (2009).

• Yong Peng, Elizabeth L Murray, Madhubanti Sarkar, Xiaoqiang Liu, and Daniel R Schoenberg
  "The cytoskeleton-associated Ena/VASP proteins are unanticipated partners of the PMR1 mRNA endonuclease."
  RNA 15, 576-87 (2009).

• Krystian Jazdzewski, Elizabeth L Murray, Kaarle Franssila, Barbara Jarzab, Daniel R Schoenberg, and Albert de la Chapelle
  "Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma."
  Proc. Natl. Acad. Sci. U.S.A. 105, 7269-74 (2008).

• Yong Peng, Xiaoqiang Liu, and Daniel R Schoenberg
  "The 90-kDa heat shock protein stabilizes the polysomal ribonuclease 1 mRNA endonuclease to degradation by the 26S proteasome."
  Mol. Biol. Cell 19, 546-52 (2008).

• Jing Peng, Elizabeth L Murray, and Daniel R Schoenberg
  "In vivo and in vitro analysis of polyA length effects on mRNA translation."
  Methods Mol. Biol. 419, 215-30 (2008).

• Elizabeth L Murray and Daniel R Schoenberg
  "Application of the Invader RNA assay to the polarity of vertebrate mRNA decay."
  Methods Mol. Biol. 419, 259-76 (2008).

• Yuichi Otsuka and Daniel R Schoenberg
  "Approaches for studying PMR1 endonuclease-mediated mRNA decay."
  Meth. Enzymol. 448, 241-63 (2008).

• Elizabeth L Murray and Daniel R Schoenberg
  "Assays for determining polyA tail length and the polarity of mRNA decay in mammalian cells."
  Meth. Enzymol. 448, 483-504 (2008).

• Daniel R Schoenberg
  "The end defines the means in bacterial mRNA decay."
  Nat. Chem. Biol. 3, 535-6 (2007).

• Heejei Yoon, Huiling He, Rebecca Nagy, Ramana Davuluri, Saul Suster, Daniel Schoenberg, Natalia Pellegata, and Albert de la Chapelle
  "Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest."
  Int. J. Cancer 121, 767-75 (2007).

• Elizabeth L Murray and Daniel R Schoenberg
  "AU-rich instability elements differentially activate 5-3 and 3-5 mRNA decay."
  Mol. Cell. Biol. 27, 2791-9 (2007).

• Yong Peng and Daniel R Schoenberg
  "c-Src activates endonuclease-mediated mRNA decay."
  Mol. Cell 25, 779-87 (2007).

• Feng Yang, Yong Peng, Elizabeth L Murray, Yuichi Otsuka, Nancy Kedersha, and Daniel R Schoenberg
  "Polysome-bound endonuclease PMR1 is targeted to stress granules via stress-specific binding to TIA-1."
  Mol. Cell. Biol. 26, 8803-13 (2006).

• Tiffiney Roberts Hartman, Shuiming Qian, Cheryl Bolinger, Soledad Fernandez, Daniel R Schoenberg, and Kathleen Boris-Lawrie
  "RNA helicase A is necessary for translation of selected messenger RNAs."
  Nat. Struct. Mol. Biol. 13, 509-16 (2006).

• Maria A Ferraiuolo, Sanjukta Basak, Josee Dostie, Elizabeth L Murray, Daniel R Schoenberg, and Nahum Sonenberg
  "A role for the eIF4E-binding protein 4E-T in P-body formation and mRNA decay."
  J. Cell Biol. 170, 913-24 (2005).

• Jing Peng and Daniel R Schoenberg
  "mRNA with a 20-nt polyA tail imparted by the polyA-limiting element is translated as efficiently in vivo as long polyA mRNA."
  RNA 11, 1131-40 (2005).

• Jing Peng, Elizabeth L Murray, and Daniel R Schoenberg
  "The polyA-limiting element enhances mRNA accumulation by increasing the efficiency of pre-mRNA 3 processing."
  RNA 11, 958-65 (2005).

• Jeremy A Sellers, Li Hou, Daniel R Schoenberg, Silvia R Batistuzzo de Medeiros, Walter Wahli, and Gregory S Shelness
  "Microsomal triglyceride transfer protein promotes the secretion of Xenopus laevis vitellogenin A1."
  J. Biol. Chem. 280, 13902-5 (2005).

• Feng Yang, Yong Peng, and Daniel R Schoenberg
  "Endonuclease-mediated mRNA decay requires tyrosine phosphorylation of polysomal ribonuclease 1 PMR1 for the targeting and degradation of polyribosome-bound substrate mRNA."
  J. Biol. Chem. 279, 48993-9002 (2004).

• Feng Yang and Daniel R Schoenberg
  "Endonuclease-mediated mRNA decay involves the selective targeting of PMR1 to polyribosome-bound substrate mRNA."
  Mol. Cell 14, 435-45 (2004).

• Mark N Hanson and Daniel R Schoenberg
  "Application of ligation-mediated reverse transcription polymerase chain reaction to the identification of in vivo endonuclease-generated messenger RNA decay intermediates."
  Methods Mol. Biol. 257, 213-22 (2004).

• Haidong Gu and Daniel R Schoenberg
  "U2AF modulates polyA length control by the polyA-limiting element."
  Nucleic Acids Res. 31, 6264-71 (2003).

• Kirsten A Bremer, Audrey Stevens, and Daniel R Schoenberg
  "An endonuclease activity similar to Xenopus PMR1 catalyzes the degradation of normal and nonsense-containing human beta-globin mRNA in erythroid cells."
  RNA 9, 1157-67 (2003).

• Audrey Stevens, Yang Wang, Kirsten Bremer, Jing Zhang, Robert Hoepfner, Michael Antoniou, Daniel R Schoenberg, and Lynne E Maquat
  "Beta -Globin mRNA decay in erythroid cells: UG site-preferred endonucleolytic cleavage that is augmented by a premature termination codon."
  Proc. Natl. Acad. Sci. U.S.A. 99, 12741-6 (2002).

• R Schneider, V I Agol, R Andino, F Bayard, D R Cavener, S A Chappell, J J Chen, J L Darlix, A Dasgupta, O Donzé, R Duncan, O Elroy-Stein, P J Farabaugh, W Filipowicz, M Gale, L Gehrke, E Goldman, Y Groner, J B Harford, M Hatzglou, B He, C U Hellen, M W Hentze, J Hershey, P Hershey, T Hohn, M Holcik, C P Hunter, K Igarashi, R Jackson, R Jagus, L S Jefferson, B Joshi, R Kaempfer, M Katze, R J Kaufman, M Kiledjian, S R Kimball, A Kimchi, K Kirkegaard, A E Koromilas, R M Krug, V Kruys, B J Lamphear, S Lemon, R E Lloyd, L E Maquat, E Martinez-Salas, M B Mathews, V P Mauro, S Miyamoto, I Mohr, D R Morris, E G Moss, N Nakashima, A Palmenberg, N T Parkin, T Peery, J Pelletier, S Peltz, T V Pestova, E V Pilipenko, A C Prats, V Racaniello, G S Read, R E Rhoads, J D Richter, R Rivera-Pomar, T Rouault, A Sachs, P Sarnow, G C Scheper, L Schiff, D R Schoenberg, B L Semler, A Siddiqui, T Skern, N Sonenberg, S M Tahara, A A Thomas, J J Toulmé, J Wilusz, E Wimmer, G Witherell, and M Wormington
  "New ways of initiating translation in eukaryotes."
  Mol. Cell. Biol. 21, 8238-46 (2001).

• J D Gupta, H Gu, and D R Schoenberg
  "Position and sequence requirements for polyA length regulation by the polyA limiting element."
  RNA 7, 1034-42 (2001).

• M N Hanson and D R Schoenberg
  "Identification of in vivo mRNA decay intermediates corresponding to sites of in vitro cleavage by polysomal ribonuclease 1."
  J. Biol. Chem. 276, 12331-7 (2001).

• K S Cunningham, M N Hanson, and D R Schoenberg
  "Polysomal ribonuclease 1 exists in a latent form on polysomes prior to estrogen activation of mRNA decay."
  Nucleic Acids Res. 29, 1156-62 (2001).

• K S Cunningham, M N Hanson, and D R Schoenberg
  "Polysomal ribonuclease 1."
  Meth. Enzymol. 342, 28-44 (2001).

• K S Cunningham, R E Dodson, M A Nagel, D J Shapiro, and D R Schoenberg
  "Vigilin binding selectively inhibits cleavage of the vitellogenin mRNA 3-untranslated region by the mRNA endonuclease polysomal ribonuclease 1."
  Proc. Natl. Acad. Sci. U.S.A. 97, 12498-502 (2000).