Center for RNA Biology Publications

Publications by Tina Henkin since 2000

• Ana Gutiérrez-Preciado, Tina M Henkin, Frank J Grundy, Charles Yanofsky, and Enrique Merino
  "Biochemical Features and Functional Implications of the RNA-Based T-Box Regulatory Mechanism."
  Microbiol. Mol. Biol. Rev. 73, 36-61 (2009).

• Tina M Henkin
  "RNA-Dependent RNA Switches in Bacteria."
  Methods Mol. Biol. 540, 207-14 (2009).

• Tina M Henkin
  "Analysis of tRNA-Directed Transcription Antitermination in the T Box System In Vivo."
  Methods Mol. Biol. 540, 281-90 (2009).

• Irina Artsimovitch and Tina M Henkin
  "In vitro approaches to analysis of transcription termination."
  Methods 47, 37-43 (2009).

• Tina M Henkin
  "Riboswitch RNAs using RNA to sense cellular metabolism."
  Genes Dev. 22, 3383-90 (2008).

• Changrui Lu, Angela M Smith, Ryan T Fuchs, Fang Ding, Kanagalaghatta Rajashankar, Tina M Henkin, and Ailong Ke
  "Crystal structures of the SAM-III/SMK riboswitch reveal the SAM-dependent translation inhibition mechanism."
  Nat. Struct. Mol. Biol. 15, 1076-83 (2008).

• Rajaneesh Anupam, Abhijit Nayek, Nicholas J Green, Frank J Grundy, Tina M Henkin, John A Means, Stephen C Bergmeier, and Jennifer V Hines
  "4,5-Disubstituted oxazolidinones High affinity molecular effectors of RNA function."
  Bioorg. Med. Chem. Lett. 18, 3541-4 (2008).

• Nancy Ontiveros-Palacios, Angela M Smith, Frank J Grundy, Mario Soberon, Tina M Henkin, and Juan Miranda-Ríos
  "Molecular basis of gene regulation by the THI-box riboswitch."
  Mol. Microbiol. 67, 793-803 (2008).

• Jerneja Tomsic, Brooke A McDaniel, Frank J Grundy, and Tina M Henkin
  "Natural variability in S-adenosylmethionine SAM-dependent riboswitches S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro."
  J. Bacteriol. 190, 823-33 (2008).

• Sandro F Ataide, Sharnise N Wilson, Sandy Dang, Theresa E Rogers, Bappaditya Roy, Rajat Banerjee, Tina M Henkin, and Michael Ibba
  "Mechanisms of resistance to an amino acid antibiotic that targets translation."
  ACS Chem. Biol. 2, 819-27 (2007).

• Ryan T Fuchs, Frank J Grundy, and Tina M Henkin
  "S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA."
  Proc. Natl. Acad. Sci. U.S.A. 104, 4876-80 (2007).

• Audrey R Nelson, Tina M Henkin, and Paul F Agris
  "tRNA regulation of gene expression interactions of an mRNA 5-UTR with a regulatory tRNA."
  RNA 12, 1254-61 (2006).

• Brooke A McDaniel, Frank J Grundy, Vineeta P Kurlekar, Jerneja Tomsic, and Tina M Henkin
  "Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression."
  J. Bacteriol. 188, 3674-81 (2006).

• Ryan T Fuchs, Frank J Grundy, and Tina M Henkin
  "The SMK box is a new SAM-binding RNA for translational regulation of SAM synthetase."
  Nat. Struct. Mol. Biol. 13, 226-33 (2006).

• Frank J Grundy and Tina M Henkin
  "From ribosome to riboswitch control of gene expression in bacteria by RNA structural rearrangements."
  Crit. Rev. Biochem. Mol. Biol. 41, 329-38 (2006).

• T M Henkin and F J Grundy
  "Sensing metabolic signals with nascent RNA transcripts the T box and S box riboswitches as paradigms."
  Cold Spring Harb. Symp. Quant. Biol. 71, 231-7 (2006).

• Brooke A McDaniel, Frank J Grundy, and Tina M Henkin
  "A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination."
  Mol. Microbiol. 57, 1008-21 (2005).

• Mary R Yousef, Frank J Grundy, and Tina M Henkin
  "Structural transitions induced by the interaction between tRNAGly and the Bacillus subtilis glyQS T box leader RNA."
  J. Mol. Biol. 349, 273-87 (2005).

• Frank J Grundy, Mary R Yousef, and Tina M Henkin
  "Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene."
  J. Mol. Biol. 346, 73-81 (2005).

• Frank J Grundy and Tina M Henkin
  "Kinetic analysis of tRNA-directed transcription antitermination of the Bacillus subtilis glyQS gene in vitro."
  J. Bacteriol. 186, 5392-9 (2004).

• Frank J Grundy and Tina M Henkin
  "Regulation of gene expression by effectors that bind to RNA."
  Curr. Opin. Microbiol. 7, 126-31 (2004).

• Frank J Grundy, Susan C Lehman, and Tina M Henkin
  "The L box regulon lysine sensing by leader RNAs of bacterial lysine biosynthesis genes."
  Proc. Natl. Acad. Sci. U.S.A. 100, 12057-62 (2003).

• Mary R Yousef, Frank J Grundy, and Tina M Henkin
  "tRNA requirements for glyQS antitermination a new twist on tRNA."
  RNA 9, 1148-56 (2003).

• Brooke A Murphy McDaniel, Frank J Grundy, Irina Artsimovitch, and Tina M Henkin
  "Transcription termination control of the S box system direct measurement of S-adenosylmethionine by the leader RNA."
  Proc. Natl. Acad. Sci. U.S.A. 100, 3083-8 (2003).

• Melinda S Gerdeman, Tina M Henkin, and Jennifer V Hines
  "Solution structure of the Bacillus subtilis T-box antiterminator RNA seven nucleotide bulge characterized by stacking and flexibility."
  J. Mol. Biol. 326, 189-201 (2003).

• Frank J Grundy and Tina M Henkin
  "The T box and S box transcription termination control systems."
  Front. Biosci. 8, d20-31 (2003).

• Frank J Grundy, Wade C Winkler, and Tina M Henkin
  "tRNA-mediated transcription antitermination in vitro codon-anticodon pairing independent of the ribosome."
  Proc. Natl. Acad. Sci. U.S.A. 99, 11121-6 (2002).

• Tina M Henkin and Charles Yanofsky
  "Regulation by transcription attenuation in bacteria how RNA provides instructions for transcription termination/antitermination decisions."
  Bioessays 24, 700-7 (2002).

• Brooke A Murphy, Frank J Grundy, and Tina M Henkin
  "Prediction of gene function in methylthioadenosine recycling from regulatory signals."
  J. Bacteriol. 184, 2314-8 (2002).

• Frank J Grundy, Tessa R Moir, Margaret T Haldeman, and Tina M Henkin
  "Sequence requirements for terminators and antiterminators in the T box transcription antitermination system disparity between conservation and functional requirements."
  Nucleic Acids Res. 30, 1646-55 (2002).

• Melinda S Gerdeman, Tina M Henkin, and Jennifer V Hines
  "In vitro structure-function studies of the Bacillus subtilis tyrS mRNA antiterminator evidence for factor-independent tRNA acceptor stem binding specificity."
  Nucleic Acids Res. 30, 1065-72 (2002).

• W C Winkler, F J Grundy, B A Murphy, and T M Henkin
  "The GA motif an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs."
  RNA 7, 1165-72 (2001).

• T R Moir-Blais, F J Grundy, and T M Henkin
  "Transcriptional activation of the Bacillus subtilis ackA promoter requires sequences upstream of the CcpA binding site."
  J. Bacteriol. 183, 2389-93 (2001).

• F J Grundy, J A Collins, S M Rollins, and T M Henkin
  "tRNA determinants for transcription antitermination of the Bacillus subtilis tyrS gene."
  RNA 6, 1131-41 (2000).

• T M Henkin
  "Transcription termination control in bacteria."
  Curr. Opin. Microbiol. 3, 149-53 (2000).