Center for RNA Biology Publications

Publications by Venkat Gopalan since 2000

• Yiren Xu, Carlos D Amero, Dileep K Pulukkunat, Venkat Gopalan, and Mark P Foster
  "Solution Structure of an Archaeal RNase P Binary Protein Complex: Formation of the 30-kDa Complex between Pyrococcus furiosus RPP21 and RPP29 Is Accompanied by Coupled Protein Folding and Highlights Critical Features for Protein-Protein and Protein-RNA Interactions."
  J. Mol. Biol. 393, 1043-55 (2009).

• Dileep K Pulukkunat and Venkat Gopalan
  "Studies on Methanocaldococcus jannaschii RNase P reveal insights into the roles of RNA and protein cofactors in RNase P catalysis."
  Nucleic Acids Res. 36, 4172-80 (2008).

• Steven A Kawamoto, Christopher G Sudhahar, Cynthia L Hatfield, Jing Sun, Edward J Behrman, and Venkat Gopalan
  "Studies on the mechanism of inhibition of bacterial ribonuclease P by aminoglycoside derivatives."
  Nucleic Acids Res. 36, 697-704 (2008).

• Venkat Gopalan
  "Uniformity amid diversity in RNase P."
  Proc. Natl. Acad. Sci. U.S.A. 104, 2031-2 (2007).

• Hsin-Yue Tsai, Dileep K Pulukkunat, Walter K Woznick, and Venkat Gopalan
  "Functional reconstitution and characterization of Pyrococcus furiosus RNase P."
  Proc. Natl. Acad. Sci. U.S.A. 103, 16147-52 (2006).

• Sunita Rangarajan, M L Stephen Raj, J Marcela Hernandez, Erich Grotewold, and Venkat Gopalan
  "RNase P as a tool for disruption of gene expression in maize cells."
  Biochem. J. 380, 611-6 (2004).

• William P Boomershine, Craig A McElroy, Hsin-Yue Tsai, Ross C Wilson, Venkat Gopalan, and Mark P Foster
  "Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P."
  Proc. Natl. Acad. Sci. U.S.A. 100, 15398-403 (2003).

• Paul S Eder, Cynthia Hatfield, Agustin Vioque, and Venkat Gopalan
  "Bacterial RNase P as a potential target for novel anti-infectives."
  Current opinion in investigational drugs London, England : 2000 4, 937-43 (2003).

• William P Boomershine, M L Stephen Raj, Venkat Gopalan, and Mark P Foster
  "Preparation of uniformly labeled NMR samples in Escherichia coli under the tight control of the araBAD promoter expression of an archaeal homolog of the RNase P Rpp29 protein."
  Protein Expr. Purif. 28, 246-51 (2003).

• Hsin-Yue Tsai, Benoît Masquida, Roopa Biswas, Eric Westhof, and Venkat Gopalan
  "Molecular modeling of the three-dimensional structure of the bacterial RNase P holoenzyme."
  J. Mol. Biol. 325, 661-75 (2003).

• Dileep K Pulukkunat, M L Stephen Raj, Debasis Pattanayak, Lien B Lai, and Venkat Gopalan
  "Exploring the potential of plant RNase P as a functional genomics tool."
  Methods Mol. Biol. 236, 295-310 (2003).

• Milan Jovanovic, Ruth Sanchez, Sidney Altman, and Venkat Gopalan
  "Elucidation of structure-function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach."
  Nucleic Acids Res. 30, 5065-73 (2002).

• Hsin-Yue Tsai, Lien B Lai, and Venkat Gopalan
  "A Modified pBluescript-based vector for facile cloning and transcription of RNAs."
  Anal. Biochem. 303, 214-7 (2002).

• Venkat Gopalan, Agustin Vioque, and Sidney Altman
  "RNase P variations and uses."
  J. Biol. Chem. 277, 6759-62 (2002).

• Cecilia Guerrier-Takada, Paul S Eder, Venkat Gopalan, and Sidney Altman
  "Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P."
  RNA 8, 290-5 (2002).

• Timothy D Eubank, Roopa Biswas, Milan Jovanovic, Alexander Litovchick, Aviva Lapidot, and Venkat Gopalan
  "Inhibition of bacterial RNase P by aminoglycoside-arginine conjugates."
  FEBS Lett. 511, 107-12 (2002).

• M L Raj, D K Pulukkunat, J F Reckard, G Thomas, and V Gopalan
  "Cleavage of bipartite substrates by rice and maize ribonuclease P. Application to degradation of target mRNAs in plants."
  Plant Physiol. 125, 1187-90 (2001).

• C W Wu, P S Eder, V Gopalan, and E J Behrman
  "Kinetics of coupling reactions that generate monothiophosphate disulfides implications for modification of RNAs."
  Bioconjug. Chem. 12, 842-4 (2001).

• R Biswas, H Kühne, G W Brudvig, and V Gopalan
  "Use of EPR spectroscopy to study macromolecular structure and function."
  Science progress 84, 45-67 (2001).

• S Altman, V Gopalan, and A Vioque
  "Varieties of RNase P: a nomenclature problem"
  RNA 6, 1689-94 (2000).

• R Biswas, D W Ledman, R O Fox, S Altman, and V Gopalan
  "Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using disulfide-linked EDTA-Fe."
  J. Mol. Biol. 296, 19-31 (2000).