Center for RNA Biology Publications

Publications by Mark Foster since 2000

• Yiren Xu, Carlos D Amero, Dileep K Pulukkunat, Venkat Gopalan, and Mark P Foster
  "Solution Structure of an Archaeal RNase P Binary Protein Complex: Formation of the 30-kDa Complex between Pyrococcus furiosus RPP21 and RPP29 Is Accompanied by Coupled Protein Folding and Highlights Critical Features for Protein-Protein and Protein-RNA Interactions."
  J. Mol. Biol. 393, 1043-55 (2009).

• Carlos D Amero, Douglas W Byerly, Craig A McElroy, Amber Simmons, and Mark P Foster
  "Ligand-induced changes in the structure and dynamics of Escherichia coli peptide deformylase."
  Biochemistry 48, 7595-607 (2009).

• Carlos D Amero, William P Boomershine, Yiren Xu, and Mark Foster
  "Solution structure of Pyrococcus furiosus RPP21, a component of the archaeal RNase P holoenzyme, and interactions with its RPP29 protein partner."
  Biochemistry 47, 11704-10 (2008).

• Hari B Kamadurai, Rinku Jain, and Mark P Foster
  "Crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase."
  Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 64, 470-3 (2008).

• C D Amero, J J Arnold, I M Moustafa, C E Cameron, and M P Foster
  "Identification of the oriI-binding site of poliovirus 3C protein by nuclear magnetic resonance spectroscopy."
  J. Virol. 82, 4363-70 (2008).

• Hari B Kamadurai and Mark P Foster
  "DNA recognition via mutual-induced fit by the core-binding domain of bacteriophage lambda integrase."
  Biochemistry 46, 13939-47 (2007).

• Srisunder Subramaniam, Hari B Kamadurai, and Mark P Foster
  "Trans cooperativity by a split DNA recombinase the central and catalytic domains of bacteriophage lambda integrase cooperate in cleaving DNA substrates when the two domains are not covalently linked."
  J. Mol. Biol. 370, 303-14 (2007).

• Mark P Foster, Craig A McElroy, and Carlos D Amero
  "Solution NMR of large molecules and assemblies."
  Biochemistry 46, 331-40 (2007).

• Craig A McElroy, Amanda Manfredo, Paul Gollnick, and Mark P Foster
  "Thermodynamics of tryptophan-mediated activation of the trp RNA-binding attenuation protein."
  Biochemistry 45, 7844-53 (2006).

• Ross C Wilson, Christopher J Bohlen, Mark P Foster, and Charles E Bell
  "Structure of Pfu Pop5, an archaeal RNase P protein."
  Proc. Natl. Acad. Sci. U.S.A. 103, 873-8 (2006).

• William P Boomershine, Craig A McElroy, Hsin-Yue Tsai, Ross C Wilson, Venkat Gopalan, and Mark P Foster
  "Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P."
  Proc. Natl. Acad. Sci. U.S.A. 100, 15398-403 (2003).

• Srisunder Subramaniam, Arun K Tewari, Simone E Nunes-Duby, and Mark P Foster
  "Dynamics and DNA substrate recognition by the catalytic domain of lambda integrase."
  J. Mol. Biol. 329, 423-39 (2003).

• William P Boomershine, M L Stephen Raj, Venkat Gopalan, and Mark P Foster
  "Preparation of uniformly labeled NMR samples in Escherichia coli under the tight control of the araBAD promoter expression of an archaeal homolog of the RNase P Rpp29 protein."
  Protein Expr. Purif. 28, 246-51 (2003).

• Tracey Arnold Murray, Mark P Foster, and Richard P Swenson
  "Mechanism of flavin mononucleotide cofactor binding to the Desulfovibrio vulgaris flavodoxin. 2. Evidence for cooperative conformational changes involving tryptophan 60 in the interaction between the phosphate- and ring-binding subsites."
  Biochemistry 42, 2317-27 (2003).

• Hari B Kamadurai, Srisunder Subramaniam, R Benjamin Jones, Kari B Green-Church, and Mark P Foster
  "Protein folding coupled to DNA binding in the catalytic domain of bacteriophage lambda integrase detected by mass spectrometry."
  Protein Sci. 12, 620-6 (2003).

• Craig McElroy, Amanda Manfredo, Alice Wendt, Paul Gollnick, and Mark Foster
  "TROSY-NMR studies of the 91kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility."
  J. Mol. Biol. 323, 463-73 (2002).

• Douglas W Byerly, Craig A McElroy, and Mark P Foster
  "Mapping the surface of Escherichia coli peptide deformylase by NMR with organic solvents."
  Protein Sci. 11, 1850-3 (2002).

• Hee-Jung Kim and Mark P Foster
  "Characterization of Ad5 E3-14.7K, an adenoviral inhibitor of apoptosis structure, oligomeric state, and metal binding."
  Protein Sci. 11, 1117-28 (2002).